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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015931115.1_cds_XP_016478003.1_69679
CDS Infomation

[gene=LOC107799408] [db_xref=GeneID:107799408] [protein=5-epi-aristolochene synthase 3] [protein_id=XP_016478003.1] [location=complement(join(25466..25762,25881..26126,26280..26418,26524..26742,26819..27194,27285..27543,27640..27750))] [gbkey=CDS]
Sequence

ATGGCCTCAGCAGCAGTAGCCAACTATGAAGAAGAGATTGTTCGCCCCGTCGCAGACTTC
TCCCCTAGTCTATGGGGTGATCAGTTCCTTTCATTCTCCATTGAAAATCAGGTTGCAGAA
AAATATGCTCAAGAGATTGAAGCATTGAAGGAACAAACGAGAAGTTTGCTGTTAGCAACC
GGAAGGAAATTGGCTGATACATTGAATTTGATTGATATTATTGAACGTCTTGGCATCTCC
TACCACTTTGAAAGACAAATTGATGAGATTTTGGATCAAATTTATAACCAAAACTTAAAC
TGCGACGATTTGTGCACTTCTGCACTTCAATTTCGATTGCTCAGGCAACACGGTTTCAAC
ATCTCTCCTGAAATTTTCAGCAAATTCCAAGATGAAAATGGCAAATTCAAGGAGTCTCTT
GCTAGTGATGTCTTAGGATTATTAAACTTGTATGAAGCTTCACATGTAAGGACTCATGCT
GACGATATCTTAGAAGACGCACTTGCTTTCTCCACTATCCATCTTGAATCTGCAGCTCCA
CATTTGAAATCTCCACTTAGGGAGCAAGTGACACATGCCCTTGAGCAATGTTTGCACAAG
GGTGTTCCTAGAGTCGAGACCCGATTCTTCATCTCATCAATCTATGACAAGGAACAATCA
AAAAATGATGTGTTACTTCGATTTGCCAAATTGGATTTCAACTTGCTACAAATGTTGCAC
AAACAAGAACTTGCTGAAGTATCAAGGTGGTGGAAAGATTTGGATTTCGTAACAACACTT
CCATATGCTAGAGATCGAGTAGTTGAATGCTACTTTTGGGCATTAGGAGTATATTTTGAG
CCTCAATACTCTCAAGCTCGCGTCATACTCGTTAAGACCATATCAATGATTTCGATTGTC
GATGACACCTTTGATGCTTATGGTACAGTTAAAGAACTTGAGGCATACACAGATGCCATA
CAAAGATGGGATATCAACGAAATTGATCGGCTTCCTGATTACATGAAAATCAGTTATAAA
GCTATTCTAGATCTTTACAAGGATTATGAAAAGGAATTGTCTAGTGCTGGAAGATCTCAT
ATTGTCTGCCATGCAATAGAAAGGATGAAAGAAGTAGTAAGAAATTATAATGTCGAGTCA
ACATGGTTTATTGAAGGATATATGCCACCTGTTTCTGAATACCTAAGCAATGCACTAGCA
ACTACTACATATTACTACCTCGCGACAACATCGTATTTGGGCATGAAGTCCGTTACGGAG
CAGGATTTTGAGTGGTTGTCAAAGAATCCTAAAATTCTTGAAGCTAGTGTGATAATATGC
CGAGTTATTGATGATACAGCCACGTACGAGGTTGAGAAAAGTCGGGGACAAATAGCAACA
GGAATTGAATGCTGCATGAGAGATTATGGCATATCAACAAAAGAGGCAATGGCTAAATTT
CAAGGAATGGCTGAAGCAGCATGGAGGGATCTTAATGAGGGATTTGTTAGGCCCACTCCT
GTATCTACGGAGATTTTATTTCGTATTCTCAATCTTGCTCGTATTGTTGAGGTTACATAT
ATACACAATCTAGATGGGTACACTCATCCGGAGAAAGTCTTGAAACCTCACATCAATGCC
CTACTTGTGGACTCCATCGAAATTTGA

Peptide Sequence

PEP ID

XP_016478003.1
PEP Infomation

PREDICTED: 5-epi-aristolochene synthase 3 [Nicotiana tabacum]
Sequence

MASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIENQVAEKYAQEIEALKEQTRSLLLAT
GRKLADTLNLIDIIERLGISYHFERQIDEILDQIYNQNLNCDDLCTSALQFRLLRQHGFN
ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP
HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNDVLLRFAKLDFNLLQMLH
KQELAEVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVILVKTISMISIV
DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH
IVCHAIERMKEVVRNYNVESTWFIEGYMPPVSEYLSNALATTTYYYLATTSYLGMKSVTE
QDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKF
QGMAEAAWRDLNEGFVRPTPVSTEILFRILNLARIVEVTYIHNLDGYTHPEKVLKPHINA
LLVDSIEI

Transcript Sequence

Gene sequence data has not been registered.